DataBases: Web sites for Chromosome Researchers


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Last: 2009.03.08
DataBases (C-Value, Chromosome numbers)

Chronis - Chromosome-Nano Information System
http://chromosome.med.niigata-u.ac.jp/chronis/

Plant DNA C-values Database @ KEW
http://data.kew.org/cvalues/homepage.html

Index to Plant Chromosome Numbers @ Missouri Botanical Garden
gopher://cissus.mobot.org:70/77/.Chromo/.index/chromo


Index to Chromosomes of Asian Pteridophyta @ Kumamoto University
http://dapc.sci.kumamoto-u.ac.jp/pterid/topdb.html

W3TROPICOS @ Missouri Botanical Garden (Chromosome Numbers in Plants)
http://mobot.mobot.org/W3T/Search/vast.html

DOGS (Database Of Genome Sizes) @ Center for Biological Sequence Analysis (CBS), The Technical University of Denmark
http://www.cbs.dtu.dk/databases/DOGS/

TelDB (GenLink Multimedia Telomere Resource)
http://www.genlink.wustl.edu/teldb/

TIGR Gene Indices
http://www.tigr.org/tdb/tgi.shtml

TREP, the Triticeae Repeat Sequence Database @ GrainGene
http://wheat.pw.usda.gov/ITMI/Repeats/index.shtml

PlantSat: A DATABASE OF PLANT SATELLITE DNA @Institute of Plant Molecular Biology, CZ
http://w3lamc.umbr.cas.cz/PlantSat/

Repbase @ Genetic Information Research Institute
http://charon.girinst.org/index.html

ChromoRep @ UniversitÓ Politecnica delle Marche - FacoltÓ di Scienze
(CHROMOREP:A REPTILES CHROMOSOMES DATABASE
The "Reptiles chromosomes database" is a catalogue of the karyological data of reptiles available so far and includes more than 2000 records.)
http://ginux.univpm.it/scienze/chromorep/

Drosophila Heterochromatin Genome Project
http://www.dhgp.org/

Nuclear Protein Database

Nuclear Protein Database (NPD) @ MRC Human Genetics Unit
(The database stores information on mammalian proteins located within the nucleus and either identified by ourselves in the course of a gene-trap screen, or in the literature. Information on proteins structure/domains/localisation and function is linked to relevant literature sources (e.g. Pubmed) or databases (e.g. Entrez, OMIM etc).You can search the database by gene/protein name(s), protein domains or motifs, nuclear compartment or by keyword.
Visit Chromosome Biology section page @ MRC Human Genetics Unit in Laboratories Page)
http://npd.hgu.mrc.ac.uk/

Human Chromosomes

Cytogenetics Image Gallery @ University of Washington
http://www.pathology.washington.edu/Cytogallery/

Genes and disease @ NCBI (Human disease)
http://www.ncbi.nlm.nih.gov/disease/

Karyotype analysis @ The Natural History of Genes
http://gslc.genetics.utah.edu/disorders/karyotype/

GeneCards: human genes, maps, proteins and diseases
http://www.rzpd.de/cards/

GenLink: A human genetics resource @ Washington University
http://www.genlink.wustl.edu/

UK Human Genome Mapping Project Resource Centre @ MRC
http://www.hgmp.mrc.ac.uk/

Human Genome Chromosome Databasese @ MRC
http://www.hgmp.mrc.ac.uk/GenomeWeb/human-gen-db-chromosomes.html#0

Human Chromosome Launchpad @ Oak Ridge National Laboratory (ORNL)
http://www.ornl.gov/hgmis/launchpad/

MCNdb : Mendelian Cytogenetics Network @ University of Copenhagen
http://mcndb.imbg.ku.dk/index.php

Atlas of Genetics and Cytogenetics in Oncology and Haematology
http://atlasgeneticsoncology.org/

YAC MAPPING DATA @ Molecular Cytogenetics and Positional Cloning Center
http://www.mpimg-berlin-dahlem.mpg.de/~cytogen/probedat.htm

GenotypesDB
(The GenotypesDB makes all genotypic data used in the construction of linkage maps presented in GenLink easily accessible through the WWW)
http://www.genlink.wustl.edu/gtypes/gtypes_home.html

The chromosomes of Acipenseriformes

The chromosomes of Acipenseriformes @ University of Ferrara
(Chromosomal images of Acipenseriformes, Acipenser, Huso, Scaphirhynchus, Polyodon, and the abstracts of all papers about Acipenseriformes chromosomes and karyotype reconstructions (when available))
http://web.unife.it/progetti/geneweb

Mink chromosome mapping

Mink chromosome mapping
http://www.husdyr.kvl.dk/htm/kc/mink.htm

Genome Projects: (Under Construction, order will be changed)

Caenorhabditis elegans

C. elegans Project at The Sanger Centre
http://www.sanger.ac.uk/Projects/C_elegans/

Caenorhabditis elegans WWW @ The University of Texas
http://elegans.swmed.edu/

Saccharomyces

Saccharomyces Genome Database @ Stanford
http://genome-www.stanford.edu/Saccharomyces/

Plants

Plant Genomes Central @ NCBI
http://www.ncbi.nlm.nih.gov/PMGifs/Genomes/PlantList.html

The Plant Chromatin Database
http://www.chromdb.org/

Genome databases, USDA-ARS Center for Bioinformatics and Comparative Genomics, Cornell University (Arabidopsis-AGR, BarleyDB, BrassicaDB, ChlamyDB, FoggDB, GrainGenes,MaizeDB, MilletGenes, RiceGenes, RoseDB,SolGenes, SorghumDB, SoyBase and so on)
http://genome.cornell.edu/

The UK Crop BioInformatics Network, UK CropNet (Arabidopsis, BarleyDB, BrassicaDB, FoggDB, MilletGenes and so on)
http://synteny.nott.ac.uk/db.html

GrainGenes, INRA
http://grain.jouy.inra.fr/

Mendel Bioinformatics Group, John Innes Centre (Mendel-ESTS, Mendel-GFTb)
http://www.mendel.ac.uk/

GABI - Genomanalyse im Biologischen System Pflanze project
http://www.mips.biochem.mpg.de/proj/gabi/projects/

KOMUGI, Wheat Network Japan, NIG
http://www.shigen.nig.ac.jp/wheat/wheat.html

The Korea Rice Genome Database, Myongji Univ
http://bioserver.myongji.ac.kr/

Plant Genome Information Resource (PGDIC) at NAL, USDA
http://www.nal.usda.gov/pgdic/

The Plant Genome Database Collaboration at UC Davis
http://dendrome.ucdavis.edu/Biology/pgd.html

Plant Genome Mapping Projects at NAL, USDA
http://www.nal.usda.gov/pgdic/Map_proj/

Oryzabase @ NIG
http://www.shigen.nig.ac.jp/rice/oryzabase/

TIGR Rice Gene Index
http://www.tigr.org/tdb/ogi/index.html

RICE GENOME RESEARCH PROGRAM (RGP), JAPAN
http://rgp.dna.affrc.go.jp/

Rice GD/Genome Database of Chinese Super Hybrid Rice, China
http://btn.genomics.org.cn/rice

Missouri Maize Project
http://cafnr.missouri.edu/mmp/index.htm

Maize Genome Analysis at CSHL
http://nucleus.cshl.org/maizegenome/

The Kazusa Arabidopsis data Opening Site
http://www.kazusa.or.jp/kaos/

The TIGR Arabidopsis thaliana Database
http://www.tigr.org/tdb/e2k1/ath1/

the Arabidopsis thaliana Genome Center at U Pennsylvania
http://genome.bio.upenn.edu/ATGCUP.html

Arabidopsis Genome Analysis at CSHL
http://nucleus.cshl.org/protarab/

AIMS: Arabidopsis Information Management System
http://aims.cps.msu.edu/aims/

TAIR (The Arabidopsis Information Resource) Database Search
http://www.arabidopsis.org/search/

Arabidopsis Functional Genomics Consortium(AFGC) @ Stanford
http://afgc.stanford.edu/

The BeanGenes Database
http://beangenes.cws.ndsu.nodak.edu/

The Grain Genes Database
http://wheat.pw.usda.gov/

Dendrome Project, Forest Tree Genome Database at UC Davis
http://dendrome.ucdavis.edu/

Human Genome

GENETHON (Human Genome Research Center, France)
http://www.genethon.fr/genethon_en.html

The Johns Hopkins University BioInformatics Web Server
http://www.bis.med.jhmi.edu/

Human Genome Mapping Project Resource Centre, UK
http://www.hgmp.mrc.ac.uk/

BodyMap: Anatomical Expression Database of Human Genes, Osaka U
http://bodymap.ims.u-tokyo.ac.jp/

OMIN: Online Mendelian Inheritance in Man @ NCBI
http://www.ncbi.nlm.nih.gov/Omim/

Human Genome Project @ The Sanger Centre
http://www.sanger.ac.uk/HGP/

The Human Genome Organisation
http://www.hugo-international.org/hugo/

Mouse and Rat Genome

Mouse Genome Informatics (MGI), The Jackson Laboratory
http://www.informatics.jax.org/

Whitehead Institute/MIT Genome Sequencing Project(Mouse and Human)
http://www-genome.wi.mit.edu/seq/public_release/

Genetic and Physical Maps of the Mouse Genome
http://carbon.wi.mit.edu:8000/cgi-bin/mouse/index

Mouse Microsatellite Data Base of Japan (MMDBJ)
http://www.shigen.nig.ac.jp/mouse/mmdbj/mouse.html

TIGR Mouse Gene Index
http://www.tigr.org/tdb/mgi/mgi.html

RATMAP (Rat Genome Database)
http://ratmap.gen.gu.se/

Animal Genome
Animal Genome Database, Japan
http://ws4.niai.affrc.go.jp/

Insect Genome

BombMap
http://www.nises.affrc.go.jp/sgp/BombMap.htm

SilkBase
http://www.ab.a.u-tokyo.ac.jp/silkbase/

FlyBase
http://www.flybase.org/

FISH (not in situ!) Genome

Medakafish at Nagoya U
http://biol1.bio.nagoya-u.ac.jp:8000/

The Zebrafish Information Network
http://zfin.org/

Fugu project @ MRC HGMP-RC
http://fugu.hgmp.mrc.ac.uk/

Tetraodon nigroviridis Genome Analysis @ Genoscope
http://www.genoscope.cns.fr/externe/tetraodon/

General databases

MAGPIE GENOME SEQUENCING PROJECT LIST
http://www-fp.mcs.anl.gov/~gaasterland/genomes.html

WWW Genome Sequencing Projects
http://arep.med.harvard.edu/gmc/genomes.html

The National Center for Biotechnology Information (GenBank, PubMed etc)
http://www.ncbi.nlm.nih.gov/

EMBL - European Molecular Biology Laboratory
http://www.embl-heidelberg.de/

European Bioinformatics Institute, EMBL
http://www.ebi.ac.uk/ebi_home.html

DNA Data Bank of Japan @ NIG
http://www.ddbj.nig.ac.jp/

Sequencing Projects @ The Sanger Centre
http://www.sanger.ac.uk/Projects/

Genomic Sciences Center @ RIKEN
http://www.gsc.riken.go.jp/


Tyrannosaurus rex Genome Browser @ Ensembl (Update 2003.4.1)
http://www.ensembl.org/Tyrannosaurus_rex/

Chromosome.net